Fischl, “Structural brain network augmentation via Kirchhoff's laws,” in Proceedings of the Joint Annual Meeting of ISMRM-ESMRMB, Milan, Italy, 2014. Aganj, “Automatic verification of the gradient table in diffusion-weighted MRI based on fiber continuity,” Scientific Reports, vol. Sapiro, “A Hough transform global probabilistic approach to multiple-subject diffusion MRI tractography,” Medical Image Analysis, vol. Harel, “Reconstruction of the orientation distribution function in single and multiple shell q-ball imaging within constant solid angle,” Magnetic Resonance in Medicine, vol. * Augment the connectivity matrix with indirect connections (Aganj et al, ISMRM 2014). * Compute and interactively visualize the connectivity matrix. * Verify the correctness of the diffusion gradient table (Aganj, Sci Rep 2018). * Visualize ODFs and tracts, and export them for further analysis. * Perform Hough-transform tractography (Aganj et al, MedIA 2011). This is a diffusion-weighted MRI processing Matlab toolbox (including binaries), which can be used to: * Compute the Q-Ball Imaging Orientation Distribution Function in Constant Solid Angle (CSA-ODF) (Aganj et al, MRM 2010). Luminal Water Imaging: A New MR Imaging T2 Mapping Technique for Prostate Cancer Diagnosis. Magnetic Resonance in Medicine 1994 31: 673–677. In vivo visualization of myelin water in brain by magnetic resonance. Applications of stimulated echo correction to multicomponent T2 analysis. Prasloski T, Mädler B, Xiang Q-S, et al.Zeitschrift für Medizinische Physik 2020 30: 271–278. DECAES – DEcomposition and Component Analysis of Exponential Signals. T2-distributions are used in applications such as myelin water imaging (Mackay et al.) and luminal water imaging (Sabouri et al.). If the stimulated echo correction is turned off, DECAES.jl can be used for decomposing any multiexponential signal into its monoexponential components. DECAES.jl computes T2-distributions by using regularized nonnegative least-squares (NNLS) to project measured MR signals onto basis sets of simulated MR signals computed using the extended phase graph (EPG) algorithm with stimulated echo correction. This package decreases computation times from hours to minutes compared to its predecessor, the ubcmwf MATLAB toolbox from the UBC MRI Research Centre (Prasloski et al.). This page was redesigned in this new GitHub format to coincide with ISMRM 2019 in Montreal.ĭEcomposition and Component Analysis of Exponential Signals (DECAES.jl) is a Julia package with command line and MATLAB interfaces which provides fast computations of voxelwise T2-distributions from multiecho spin-echo MRI images (Doucette et al.). Please also see for more crowd-sourced information related to open science and reproducibility within the MRI community. This page is found here: - where you can also find instructionsįor how to add your own package via a pull-request to the repository. Of the ISMRM - and we encourage anyone with suggestions for additions and improvements to get involved. This page is managed by the Reproducible Research Study Group We encourage all members of the ISMRM community to follow the spirit of reproducible research, andĬonsider making the code behind their publications available to share. Rest of the community - hopefully making more people aware of existing tools, allowing others to solve their own problems more rapidlyīy building on existing solutions. The MR-Hub offers a platform where researchers can share their software solutions with the Image reconstruction and data processing. Many members of the ISMRM community develop customized software tools to solve problems in various aspects of MR sequence design,
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